← schema

single-cell

Fields

attributetypecardinalityunique?required?docexamples
cell-populationscell-populationmanyAny cell populations to which this cell has been assigned membership, e.g. via clustering.
idstringoneyesThe id for a given single cell. Must be uniquely identifying, so often a concatenation, e.g. sample-barcode.
image-segment-areafloatoneArea (in pixels) of image segment
normalized-image-coordinate-xfloatoneX coordinate in normalized image coordinate scheme for segment centroid
normalized-image-coordinate-yfloatoneY coordinate in normalized image coordinate scheme for segment centroid
pixel-image-offset-xfloatoneX coordinate in pixel offset (upper left coordinates) for segment centroid
pixel-image-offset-yfloatoneY coordinate in pixel offset (upper left coordinates) for segment centroid
samplesampleoneThe sample from which this single cell was sourced.
uid[[* string]]oneyesSynthetic unique ID for single cells.

Inverse Relations

fromattributecardinalityrequired?doc
measurement-matrixsingle-cellsmanyThe set of all single cells referenced in this measurement matrix file.
Unique ID: uid
Label: id